Publications:

15. Axiomatic opportunities and obstacles for inferring a species tree from gene trees (with Mike Steel)
Systematic Biology 63(5) (2014) pp. 772-778
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14. Evolutionary and Newtonian Forces (with Chris Hitchcock)
Ergo 1(2) (2014) pp. 39-77. http://dx.doi.org/10.3998/ergo.12405314.0001.002
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13. Deep Conventionalism about Evolutionary Groups (with Matt Barker)
Philosophy of Science 80(5) (2013) pp. 971-982
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12. Philosophy and Phylogenetics
Philosophy Compass 8(10) (2013) pp. 990-998
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11. Phylogeny as Population History
Philosophy and Theory in Biology (2013) 5:e402
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10. The Future of Systematics: Tree-Thinking Without the Tree
Philosophy of Science 79(5) (2012), pp. 624-636
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9. Objective and Subjective Probability in Gene Expression
Progress in Biophysics and Molecular Biology 110(2012), pp. 5-10
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8. The Tree of Life -- In Michael Ruse (ed.) The Cambridge Encyclopedia of Darwin and Evolutionary Thought. Cambridge University Press. 2013. pgs 430-435.   download pdf
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7. Testing for Treeness: Lateral Gene Transfer, Phylogenetic Inference, and Model Selection (with Elliott Sober)
Biology and Philosophy 25 (2010), pp. 675-687

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6. Species, Genes, and the Tree of Life
British Journal for the Philosophy of Science 61 (2010), pp. 599-619
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5. When monophyly is not enough: Exclusivity as the key to defining a phylogenetic species concept
Biology & Philosophy 24 (2009), pp. 473-486
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4. Species concepts should not conflict with evolutionary history, but often do
Studies in History and Philosophy of Biological and Biomedical Sciences 39 (2008), pp. 407-414
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3. The Prior Probabilities of Phylogenetic Trees
Biology & Philosophy 23 (2008), pp. 455-473
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2. The internodal species concept: a response to “The tree, the network, and the species
Biological Journal of the Linnean Society 93(4) (2008) pp. 865-869
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1. Why non-uniform priors on clades are both unavoidable and unobjectionable
Molecular Phylogenetics and Evolution 45 (2007) pp. 748–749
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  Philosophy and the Tree of Life: The Metaphysics and Epistemology of Phylogenetic Systematics
My dissertation - completed in May, 2008
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Book Reviews:

Review of Richard A. Richards The Species Problem for The Philosophical Review 120 (2011) 598-602

Untitled Review

Review of Michael Ruse (ed.) Handbook of Philosophy of Biology for Metascience 21 (2012) 359-362

The Wide Scope of Philosophy of Biology